pyref

Fast PRSoXR data reduction for ALS Beamline 11.0.1.2.

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This repository contains the Python package, Rust acceleration layer, and tooling for PRSoXR beamtime ingestion and reduction.

• python/pyref - User-facing Python API for loading, reduction, and analysis.
• src - Rust backend for high-throughput IO and performance-critical paths.
• tests - Python test suite and integration checks.
• AGENTS.md - Full project architecture, conventions, and contributor guide.
• Documentation Site - Hosted docs and API references.

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Quickstart

Install:

pip install pyref

Python >=3.12 is required.

Load a beamtime and inspect reduced data:

from pathlib import Path
from pyref.loader import PrsoxrLoader

loader = PrsoxrLoader(Path("/path/to/beamtime"))

refl = loader.refl
meta = loader.meta

loader.plot_data()

Optional interactive tools:

loader.mask_image()
loader.check_spot()

Development

All development commands use uv for Python and cargo for Rust:

git clone https://github.com/WSU-Carbon-Lab/pyref.git
cd pyref
uv sync
uv run pytest

Build the experiment browser TUI:

cargo browser

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